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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031515 through 18771 annotations produced 1 hits



(CG9664):

Annotation Number : CG9664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031515
Gbrowse : chr2L:3291244-3294690 (-) // 100.0 //
Probeset : 1634180_s_at
Accessions : protein= NP_608759; /// NP_722889; /// NP_722890;, nucleotide= NM_134915; /// NM_164532; /// NM_164533;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0031515.
Homophila reports that CG9664 is a close match (9e-13) to human gene ABCA12;ICR2B;LI2 (NP_775099), a gene associated with Ichthyosis, harlequin, 242500 (3);Ichthyosis, lamellar 2, 601277 (3).
VDRC has 2 RNAi stocks for FBgn0031515 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 14 of 4 0.90None
Head74 74 of 4 2.80Up
Eye55 44 of 4 2.06Up
Thoracicoabdominal ganglion36 14 of 4 1.40Up
Salivary gland19 22 of 4 0.74None
Crop78 64 of 4 2.90Up
Midgut87 24 of 4 3.30Up
Tubule76 114 of 4 2.90Up
Hindgut25 14 of 4 1.00None
Heart71 54 of 4 2.68Up
Fat body113 24 of 4 4.22Up
Ovary2 00 of 4 0.10Down
Testis71 54 of 4 2.70Up
Male accessory glands9 01 of 4 0.40Down
Virgin spermatheca115 34 of 4 4.31Up
Mated spermatheca73 84 of 4 2.74Up
Adult carcass128 54 of 4 4.80Up
Larval CNS13 24 of 4 0.52Down
Larval Salivary gland8 03 of 4 0.33Down
Larval midgut303 884 of 411.35None
Larval tubule463 714 of 417.30Up
Larval hindgut12 23 of 4 0.46Down
Larval fat body900 834 of 433.60Up
Larval trachea27 64 of 4 1.01None
Larval carcass68 234 of 4 2.55None
S2 cells (growing)2 11 of 4 0.11Down
Whole fly26 34 of 4

Looking for FBgn0031515. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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