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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031517 through 18771 annotations produced 1 hits


(CG15406):

Annotation Number : CG15406
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031517
Gbrowse : chr2L:3309222-3311651 (+) // 100.0 //
Probeset : 1630334_at
Accessions : protein= NP_608761;, nucleotide= NM_134917;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005353 // fructose transmembrane transporter
FlyMine data for FBgn0031517.
Homophila reports that CG15406 is a close match (3e-13) to human gene DYT18;GLUT1;PED;SLC2A1 (NP_006507), a gene associated with Dystonia-18, 612126 (3);Glucose transport defect, blood-brain barrier, 606777 (3);Paroxysmal exertion-induced dyskinesia and hemolytic anemia, 612126 (3).
VDRC has 3 RNAi stocks for FBgn0031517 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.00Down
Head6 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland15 ± 20 of 4 0.09Down
Crop2 ± 00 of 4 0.00Down
Midgut19 ± 14 of 4 0.10Down
Tubule4941 ± 2534 of 429.80Up
Hindgut8 ± 10 of 4 0.00Down
Heart11 ± 63 of 4 0.07Down
Fat body29 ± 293 of 4 0.18Down
Ovary3 ± 00 of 4 0.00Down
Testis10 ± 04 of 4 0.10Down
Male accessory glands8 ± 20 of 4 0.10Down
Virgin spermatheca26 ± 173 of 4 0.16Down
Mated spermatheca12 ± 13 of 4 0.07Down
Adult carcass18 ± 42 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.02Down
Larval Salivary gland3 ± 00 of 4 0.02Down
Larval midgut9 ± 21 of 4 0.06Down
Larval tubule4193 ± 1084 of 425.30Up
Larval hindgut63 ± 34 of 4 0.39Down
Larval fat body14 ± 30 of 4 0.10Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass7 ± 12 of 4 0.05Down
S2 cells (growing)3 ± 00 of 4 0.02Down
Whole fly165 ± 224 of 4

Looking for FBgn0031517. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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