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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031519 through 18771 annotations produced 1 hits



fidgetin_DROME (CG3326):

Annotation Number : CG3326
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031519
Gbrowse : chr2L:3317468-3319872 (-) // 100.0 //
Probeset : 1624312_at
Accessions : protein= NP_608763;, nucleotide= NM_134919;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred fr
FlyMine data for FBgn0031519.
Homophila reports that CG3326 is a close match (3e-17) to human gene CAR;CMAR;PGN;SPG7 (NP_955399), a gene associated with Spastic paraplegia-7, 607259 (3).
TRiP has 1 RNAi stocks for FBgn0031519 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031519 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.10Down
Head5 ± 00 of 4 0.10Down
Eye3 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland9 ± 40 of 4 0.25Down
Crop3 ± 10 of 4 0.10Down
Midgut8 ± 00 of 4 0.20Down
Tubule18 ± 03 of 4 0.50Down
Hindgut3 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.10Down
Fat body8 ± 22 of 4 0.23Down
Ovary86 ± 24 of 4 2.30Up
Testis26 ± 24 of 4 0.70Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca5 ± 11 of 4 0.15Down
Mated spermatheca6 ± 20 of 4 0.18Down
Adult carcass13 ± 51 of 4 0.30Down
Larval CNS15 ± 14 of 4 0.40Down
Larval Salivary gland2 ± 00 of 4 0.06Down
Larval midgut3 ± 10 of 4 0.08Down
Larval tubule12 ± 23 of 4 0.30Down
Larval hindgut5 ± 10 of 4 0.15Down
Larval fat body14 ± 03 of 4 0.40Down
Larval trachea10 ± 43 of 4 0.28Down
Larval carcass6 ± 20 of 4 0.17Down
S2 cells (growing)12 ± 14 of 4 0.33Down
Whole fly38 ± 24 of 4

Looking for FBgn0031519. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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