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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031520 through 18771 annotations produced 1 hits



(CG8837):

Annotation Number : CG8837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031520
Gbrowse : chr2L:3320589-3323037 (+) // 100.0 //
Probeset : 1626081_at
Accessions : protein= NP_608764;, nucleotide= NM_134920;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0031520.
VDRC has 3 RNAi stocks for FBgn0031520 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 44 of 4 5.90Up
Head53 ± 44 of 4 3.00Up
Eye41 ± 14 of 4 2.35Up
Thoracicoabdominal ganglion125 ± 34 of 4 7.00Up
Salivary gland14 ± 10 of 4 0.79None
Crop2 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule1088 ± 2314 of 461.20Up
Hindgut6 ± 10 of 4 0.30Down
Heart7 ± 00 of 4 0.43Down
Fat body8 ± 51 of 4 0.48Down
Ovary1 ± 10 of 4 0.10Down
Testis36 ± 24 of 4 2.10Up
Male accessory glands9 ± 30 of 4 0.50None
Virgin spermatheca5 ± 10 of 4 0.29Down
Mated spermatheca5 ± 00 of 4 0.31Down
Adult carcass22 ± 22 of 4 1.30None
Larval CNS32 ± 44 of 4 1.83Up
Larval Salivary gland1 ± 10 of 4 0.11Down
Larval midgut2 ± 00 of 4 0.15Down
Larval tubule214 ± 64 of 412.10Up
Larval hindgut17 ± 23 of 4 0.95None
Larval fat body7 ± 30 of 4 0.40Down
Larval trachea2 ± 20 of 4 0.15Down
Larval carcass5 ± 10 of 4 0.31Down
S2 cells (growing)2 ± 00 of 4 0.15Down
Whole fly17 ± 24 of 4

Looking for FBgn0031520. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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