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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031523 through 18771 annotations produced 1 hits


(CG15408):

Annotation Number : CG15408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031523
Gbrowse : chr2L:3332910-3334723 (+) // 100.0 //
Probeset : 1640529_at
Accessions : protein= NP_608767;, nucleotide= NM_134923;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005353 // fructose transmembrane transporter
FlyMine data for FBgn0031523.
Homophila reports that CG15408 is a close match (4e-12) to human gene DYT18;GLUT1;PED;SLC2A1 (NP_006507), a gene associated with Dystonia-18, 612126 (3);Glucose transport defect, blood-brain barrier, 606777 (3);Paroxysmal exertion-induced dyskinesia and hemolytic anemia, 612126 (3).
VDRC has 2 RNAi stocks for FBgn0031523 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland6 ± 20 of 4 0.09Down
Crop3 ± 00 of 4 0.10Down
Midgut2 ± 00 of 4 0.00Down
Tubule4337 ± 3314 of 464.10Up
Hindgut3 ± 10 of 4 0.00Down
Heart4 ± 10 of 4 0.06Down
Fat body13 ± 181 of 4 0.19Down
Ovary1 ± 00 of 4 0.00Down
Testis7 ± 11 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.02Down
Mated spermatheca1 ± 00 of 4 0.02Down
Adult carcass5 ± 10 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland2 ± 10 of 4 0.04Down
Larval midgut5 ± 30 of 4 0.08Down
Larval tubule3238 ± 814 of 447.80Up
Larval hindgut21 ± 24 of 4 0.32None
Larval fat body6 ± 20 of 4 0.10Down
Larval trachea3 ± 31 of 4 0.05Down
Larval carcass5 ± 20 of 4 0.08Down
S2 cells (growing)3 ± 10 of 4 0.05Down
Whole fly67 ± 154 of 4

Looking for FBgn0031523. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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