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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031526 through 18771 annotations produced 1 hits



(CG8838):

Annotation Number : CG8838
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031526
Gbrowse : chr2L:3357683-3358618 (+) // 100.0 //
Probeset : 1640914_at
Accessions : protein= NP_608769;, nucleotide= NM_134925;
FlyMine data for FBgn0031526.
BDGP gene expression has embryonic in situ data for CG8838: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031526 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland5 ± 20 of 4 0.03Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.02Down
Fat body2 ± 10 of 4 0.02Down
Ovary0 ± 00 of 4 0.00Down
Testis1361 ± 304 of 4 8.90Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca6 ± 20 of 4 0.04Down
Mated spermatheca9 ± 30 of 4 0.06Down
Adult carcass4 ± 10 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut2 ± 00 of 4 0.02Down
Larval tubule14 ± 20 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body190 ± 903 of 4 1.20None
Larval trachea10 ± 160 of 4 0.07Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly152 ± 124 of 4

Looking for FBgn0031526. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime