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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031528 through 18771 annotations produced 1 hits



(CG15412):

Annotation Number : CG15412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031528
Gbrowse : chr2L:3373780-3375408 (-) // 100.0 //
Probeset : 1637626_at
Accessions : protein= NP_001097072;, nucleotide= NM_001103602;
FlyMine data for FBgn0031528.
VDRC has 2 RNAi stocks for FBgn0031528 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 0.30Down
Head34 44 of 4 0.70None
Eye7 10 of 4 0.17Down
Thoracicoabdominal ganglion18 24 of 4 0.40Down
Salivary gland13 21 of 4 0.28Down
Crop85 24 of 4 1.80Up
Midgut5 11 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut28 14 of 4 0.60Down
Heart69 44 of 4 1.49Up
Fat body5 51 of 4 0.12Down
Ovary0 00 of 4 0.00Down
Testis7 12 of 4 0.20Down
Male accessory glands10 20 of 4 0.20Down
Virgin spermatheca4 00 of 4 0.11Down
Mated spermatheca8 11 of 4 0.17Down
Adult carcass228 54 of 4 4.90Up
Larval CNS3 10 of 4 0.08Down
Larval Salivary gland7 20 of 4 0.16Down
Larval midgut6 21 of 4 0.13Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut10 14 of 4 0.23Down
Larval fat body2 10 of 4 0.10Down
Larval trachea3 20 of 4 0.08Down
Larval carcass43 44 of 4 0.93None
S2 cells (growing)2 00 of 4 0.06Down
Whole fly46 44 of 4

Looking for FBgn0031528. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime