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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031535 through 18771 annotations produced 1 hits



(CG12795):

Annotation Number : CG12795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031535
Gbrowse : chr2L:3452487-3453305 (+) // 100.0 //
Probeset : 1637606_at
Accessions : protein= NP_001097074;, nucleotide= NM_001103604;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0031535.
BDGP gene expression has embryonic in situ data for CG12795: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0031535 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031535 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 ± 24 of 4 0.40Down
Head65 ± 84 of 4 0.30Down
Eye210 ± 54 of 4 1.13None
Thoracicoabdominal ganglion40 ± 24 of 4 0.20Down
Salivary gland78 ± 64 of 4 0.42Down
Crop63 ± 34 of 4 0.30Down
Midgut89 ± 24 of 4 0.50Down
Tubule51 ± 44 of 4 0.30Down
Hindgut39 ± 44 of 4 0.20Down
Heart196 ± 144 of 4 1.05None
Fat body120 ± 454 of 4 0.65None
Ovary540 ± 114 of 4 2.90Up
Testis112 ± 44 of 4 0.60Down
Male accessory glands63 ± 94 of 4 0.30Down
Virgin spermatheca19 ± 22 of 4 0.10Down
Mated spermatheca21 ± 13 of 4 0.12Down
Adult carcass115 ± 124 of 4 0.60Down
Larval CNS33 ± 64 of 4 0.18Down
Larval Salivary gland110 ± 344 of 4 0.59None
Larval midgut76 ± 93 of 4 0.41Down
Larval tubule164 ± 104 of 4 0.90None
Larval hindgut41 ± 24 of 4 0.22Down
Larval fat body95 ± 74 of 4 0.50Down
Larval trachea78 ± 104 of 4 0.42Down
Larval carcass79 ± 74 of 4 0.43Down
S2 cells (growing)153 ± 64 of 4 0.82None
Whole fly186 ± 114 of 4

Looking for FBgn0031535. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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