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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031536 through 18771 annotations produced 1 hits



CG3248 (Cog3):

Annotation Number : CG3248
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031536
Gbrowse : chr2L:3453696-3457058 (-) // 100.0 //
Probeset : 1629650_at
Accessions : protein= NP_608779;, nucleotide= NM_134935;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred
FlyMine data for FBgn0031536.
BDGP gene expression has embryonic in situ data for CG3248: 10 pix of staining in 4 body parts.
BioGrid reports that CG3248 interacts with CG7558 .
VDRC has 3 RNAi stocks for FBgn0031536 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 04 of 4 1.00None
Head55 34 of 4 0.70Down
Eye64 44 of 4 0.83None
Thoracicoabdominal ganglion106 34 of 4 1.40Up
Salivary gland199 134 of 4 2.54Up
Crop95 74 of 4 1.20None
Midgut83 34 of 4 1.10None
Tubule76 14 of 4 1.00None
Hindgut83 34 of 4 1.10None
Heart56 34 of 4 0.73Down
Fat body71 94 of 4 0.92None
Ovary121 54 of 4 1.50Up
Testis59 54 of 4 0.80Down
Male accessory glands187 94 of 4 2.40Up
Virgin spermatheca84 84 of 4 1.07None
Mated spermatheca90 34 of 4 1.15None
Adult carcass57 54 of 4 0.70Down
Larval CNS70 34 of 4 0.90None
Larval Salivary gland341 174 of 4 4.35Up
Larval midgut68 44 of 4 0.87None
Larval tubule120 104 of 4 1.50Up
Larval hindgut100 54 of 4 1.28Up
Larval fat body55 104 of 4 0.70None
Larval trachea63 54 of 4 0.81Down
Larval carcass86 44 of 4 1.10None
S2 cells (growing)101 04 of 4 1.29Up
Whole fly78 34 of 4

Looking for FBgn0031536. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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