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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031540 through 18771 annotations produced 1 hits


Annotation Number : CG3238
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031540
Gbrowse : chr2L:3467415-3470007 (-) // 100.0 //
Probeset : 1639821_at
Accessions : protein= NP_608782;, nucleotide= NM_134938;
FlyMine data for FBgn0031540.
BDGP gene expression has embryonic in situ data for CG3238: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0031540 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 12 of 4 0.00Down
Head7 02 of 4 0.10Down
Eye5 11 of 4 0.05Down
Thoracicoabdominal ganglion6 02 of 4 0.10Down
Salivary gland19 33 of 4 0.16Down
Crop23 34 of 4 0.20Down
Midgut15 14 of 4 0.10Down
Tubule13 13 of 4 0.10Down
Hindgut14 34 of 4 0.10Down
Heart10 13 of 4 0.09Down
Fat body19 74 of 4 0.16Down
Ovary279 84 of 4 2.30Up
Testis5 03 of 4 0.00Down
Male accessory glands8 12 of 4 0.10Down
Virgin spermatheca17 34 of 4 0.14Down
Mated spermatheca18 14 of 4 0.15Down
Adult carcass18 53 of 4 0.10Down
Larval CNS99 104 of 4 0.83Down
Larval Salivary gland23 34 of 4 0.19Down
Larval midgut12 04 of 4 0.10Down
Larval tubule11 04 of 4 0.10Down
Larval hindgut19 24 of 4 0.16Down
Larval fat body11 04 of 4 0.10Down
Larval trachea31 54 of 4 0.26Down
Larval carcass17 24 of 4 0.15Down
S2 cells (growing)28 04 of 4 0.24Down
Whole fly120 34 of 4

Looking for FBgn0031540. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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