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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031545 through 18771 annotations produced 1 hits


(CG3213):

Annotation Number : CG3213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031545
Gbrowse : chr2L:3517267-3519697 (-) // 100.0 //
Probeset : 1639298_at
Accessions : protein= NP_608787;, nucleotide= NM_134943;
Pathway : 0005840 // ribosome // inferred from electronic annotation
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // i
FlyMine data for FBgn0031545.
BioGrid reports that CG3213 interacts with CG6972 CG32156 CG4276 CG6156 CG7386 CG8851 .
VDRC has 2 RNAi stocks for FBgn0031545 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head9 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion8 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.01Down
Crop4 ± 00 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule7 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart3 ± 00 of 4 0.01Down
Fat body10 ± 50 of 4 0.02Down
Ovary4 ± 10 of 4 0.00Down
Testis2488 ± 1074 of 4 4.70Up
Male accessory glands9 ± 20 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.01Down
Mated spermatheca9 ± 10 of 4 0.02Down
Adult carcass24 ± 81 of 4 0.00Down
Larval CNS3 ± 20 of 4 0.01Down
Larval Salivary gland5 ± 00 of 4 0.01Down
Larval midgut4 ± 10 of 4 0.01Down
Larval tubule9 ± 00 of 4 0.00Down
Larval hindgut4 ± 00 of 4 0.01Down
Larval fat body459 ± 2604 of 4 0.90None
Larval trachea14 ± 221 of 4 0.03Down
Larval carcass11 ± 10 of 4 0.02Down
S2 cells (growing)6 ± 11 of 4 0.01Down
Whole fly531 ± 294 of 4

Looking for FBgn0031545. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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