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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031548 through 18771 annotations produced 1 hits



(CG8852):

Annotation Number : CG8852
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031548
Gbrowse : chr2L:3525132-3527588 (+) // 100.0 //
Probeset : 1624893_at
Accessions : protein= NP_608790;, nucleotide= NM_134946;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0031548.
BDGP gene expression has embryonic in situ data for CG8852: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0031548 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 03 of 4 0.30Down
Head16 ± 24 of 4 0.90None
Eye4 ± 12 of 4 0.26Down
Thoracicoabdominal ganglion7 ± 03 of 4 0.40Down
Salivary gland12 ± 31 of 4 0.66None
Crop32 ± 14 of 4 1.70Up
Midgut129 ± 54 of 4 6.90Up
Tubule46 ± 44 of 4 2.50Up
Hindgut68 ± 14 of 4 3.70Up
Heart65 ± 54 of 4 3.50Up
Fat body15 ± 44 of 4 0.84None
Ovary8 ± 04 of 4 0.50Down
Testis26 ± 34 of 4 1.40None
Male accessory glands32 ± 34 of 4 1.70Up
Virgin spermatheca7 ± 04 of 4 0.42Down
Mated spermatheca12 ± 04 of 4 0.66Down
Adult carcass43 ± 14 of 4 2.30Up
Larval CNS6 ± 04 of 4 0.36Down
Larval Salivary gland12 ± 13 of 4 0.64Down
Larval midgut154 ± 154 of 4 8.25Up
Larval tubule36 ± 34 of 4 1.90Up
Larval hindgut72 ± 14 of 4 3.86Up
Larval fat body13 ± 24 of 4 0.70None
Larval trachea6 ± 31 of 4 0.37Down
Larval carcass137 ± 104 of 4 7.34Up
S2 cells (growing)7 ± 04 of 4 0.41Down
Whole fly18 ± 04 of 4

Looking for FBgn0031548. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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