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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031550 through 18771 annotations produced 1 hits



(CG8853):

Annotation Number : CG8853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031550
Gbrowse : chr2L:3530902-3532526 (+) // 100.0 //
Probeset : 1639369_at
Accessions : protein= NP_608792;, nucleotide= NM_134948;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
FlyMine data for FBgn0031550.
VDRC has 3 RNAi stocks for FBgn0031550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 1.90None
Head10 ± 22 of 4 2.80None
Eye6 ± 00 of 4 1.88None
Thoracicoabdominal ganglion6 ± 10 of 4 1.70None
Salivary gland19 ± 101 of 4 5.46None
Crop4 ± 11 of 4 1.30None
Midgut7 ± 00 of 4 2.10None
Tubule7 ± 00 of 4 2.10Up
Hindgut4 ± 10 of 4 1.20None
Heart5 ± 21 of 4 1.50None
Fat body16 ± 72 of 4 4.55Up
Ovary2 ± 10 of 4 0.70None
Testis9 ± 11 of 4 2.50None
Male accessory glands9 ± 20 of 4 2.80None
Virgin spermatheca12 ± 10 of 4 3.43Up
Mated spermatheca7 ± 10 of 4 2.03None
Adult carcass14 ± 30 of 4 4.10Up
Larval CNS6 ± 30 of 4 1.69None
Larval Salivary gland13 ± 13 of 4 3.65Up
Larval midgut9 ± 01 of 4 2.73Up
Larval tubule7 ± 00 of 4 2.10None
Larval hindgut5 ± 10 of 4 1.62None
Larval fat body8 ± 41 of 4 2.50None
Larval trachea5 ± 30 of 4 1.56None
Larval carcass4 ± 10 of 4 1.32None
S2 cells (growing)7 ± 10 of 4 2.20None
Whole fly3 ± 10 of 4

Looking for FBgn0031550. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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