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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031554 through 18771 annotations produced 1 hits


(CG15418):

Annotation Number : CG15418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031554
Gbrowse : chr2L:3621148-3621681 (-) // 100.0 //
Probeset : 1629673_at
Accessions : protein= NP_608794;, nucleotide= NM_134950;
Interpro : 0004866 // endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 // serine-typ
FlyMine data for FBgn0031554.
VDRC has 3 RNAi stocks for FBgn0031554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head5 ± 11 of 4 0.10Down
Eye6 ± 01 of 4 0.12Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.14Down
Crop5 ± 41 of 4 0.10Down
Midgut95 ± 44 of 4 1.80Up
Tubule8 ± 10 of 4 0.20Down
Hindgut5 ± 10 of 4 0.10Down
Heart6 ± 11 of 4 0.13Down
Fat body10 ± 10 of 4 0.19Down
Ovary43 ± 44 of 4 0.80None
Testis453 ± 204 of 4 8.80Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca14 ± 12 of 4 0.27Down
Mated spermatheca10 ± 10 of 4 0.19Down
Adult carcass8 ± 11 of 4 0.20Down
Larval CNS4 ± 20 of 4 0.08Down
Larval Salivary gland6 ± 10 of 4 0.13Down
Larval midgut4 ± 10 of 4 0.08Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut5 ± 10 of 4 0.11Down
Larval fat body88 ± 324 of 4 1.70None
Larval trachea5 ± 60 of 4 0.11Down
Larval carcass4 ± 10 of 4 0.08Down
S2 cells (growing)2 ± 10 of 4 0.06Down
Whole fly51 ± 84 of 4

Looking for FBgn0031554. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime