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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031558 through 18771 annotations produced 1 hits



(CG16704):

Annotation Number : CG16704
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031558
Gbrowse : chr2L:3692126-3692588 (-) // 100.0 //
Probeset : 1629083_at
Accessions : protein= NP_608797;, nucleotide= NM_134953;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0031558.
BDGP gene expression has embryonic in situ data for CG16704: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031558 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 24 of 4 0.10Down
Head1262 ± 1404 of 4 5.90Up
Eye435 ± 954 of 4 2.05None
Thoracicoabdominal ganglion34 ± 14 of 4 0.20Down
Salivary gland11 ± 31 of 4 0.05Down
Crop34 ± 54 of 4 0.20Down
Midgut2 ± 00 of 4 0.00Down
Tubule17 ± 32 of 4 0.10Down
Hindgut67 ± 74 of 4 0.30Down
Heart606 ± 294 of 4 2.86Up
Fat body1924 ± 2474 of 4 9.06Up
Ovary3 ± 01 of 4 0.00Down
Testis3 ± 00 of 4 0.00Down
Male accessory glands6 ± 10 of 4 0.00Down
Virgin spermatheca2247 ± 794 of 410.58Up
Mated spermatheca1199 ± 1404 of 4 5.65Up
Adult carcass974 ± 284 of 4 4.60Up
Larval CNS3 ± 12 of 4 0.02Down
Larval Salivary gland316 ± 334 of 4 1.49None
Larval midgut11 ± 22 of 4 0.05Down
Larval tubule44 ± 94 of 4 0.20Down
Larval hindgut314 ± 934 of 4 1.48None
Larval fat body5767 ± 6874 of 427.20Up
Larval trachea92 ± 784 of 4 0.44None
Larval carcass130 ± 94 of 4 0.61None
S2 cells (growing)4 ± 03 of 4 0.02Down
Whole fly212 ± 424 of 4

Looking for FBgn0031558. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime