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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031560 through 18771 annotations produced 1 hits



(CG16713):

Annotation Number : CG16713
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031560
Gbrowse : chr2L:3695027-3695406 (-) // 100.0 //
Probeset : 1624057_at
Accessions : protein= NP_608799;, nucleotide= NM_134955;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0031560.
VDRC has 5 RNAi stocks for FBgn0031560 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 13 of 4 0.00Down
Head1058 344 of 4 2.90Up
Eye984 1794 of 4 2.68Up
Thoracicoabdominal ganglion23 24 of 4 0.10Down
Salivary gland115 264 of 4 0.31Down
Crop191 214 of 4 0.50Down
Midgut10 51 of 4 0.00Down
Tubule59 213 of 4 0.20Down
Hindgut3451 894 of 4 9.40Up
Heart1461 784 of 4 3.97Up
Fat body3425 4564 of 4 9.31Up
Ovary3 11 of 4 0.00Down
Testis2 00 of 4 0.00Down
Male accessory glands21 51 of 4 0.10Down
Virgin spermatheca3119 1034 of 4 8.48Up
Mated spermatheca2412 1784 of 4 6.56Up
Adult carcass1304 1084 of 4 3.50Up
Larval CNS7 10 of 4 0.02Down
Larval Salivary gland60 64 of 4 0.16Down
Larval midgut7 10 of 4 0.02Down
Larval tubule12 23 of 4 0.00Down
Larval hindgut454 534 of 4 1.24None
Larval fat body2817 3954 of 4 7.70Up
Larval trachea28 154 of 4 0.08Down
Larval carcass32 83 of 4 0.09Down
S2 cells (growing)3 00 of 4 0.01Down
Whole fly368 164 of 4

Looking for FBgn0031560. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime