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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031563 through 18771 annotations produced 1 hits



(CG10031):

Annotation Number : CG10031
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031563
Gbrowse : chr2L:3698554-3699091 (-) // 100.0 //
Probeset : 1625457_at
Accessions : protein= NP_608802;, nucleotide= NM_134958;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase
FlyMine data for FBgn0031563.
BDGP gene expression has embryonic in situ data for CG10031: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031563 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 34 of 4 0.30Down
Head542 ± 294 of 4 4.50Up
Eye428 ± 454 of 4 3.55Up
Thoracicoabdominal ganglion74 ± 04 of 4 0.60Down
Salivary gland9 ± 40 of 4 0.08Down
Crop8 ± 30 of 4 0.10Down
Midgut4 ± 10 of 4 0.00Down
Tubule6 ± 00 of 4 0.10Down
Hindgut135 ± 34 of 4 1.10Up
Heart858 ± 654 of 4 7.11Up
Fat body1115 ± 764 of 4 9.25Up
Ovary3 ± 00 of 4 0.00Down
Testis7 ± 11 of 4 0.10Down
Male accessory glands150 ± 54 of 4 1.20Up
Virgin spermatheca665 ± 334 of 4 5.52Up
Mated spermatheca636 ± 424 of 4 5.28Up
Adult carcass543 ± 194 of 4 4.50Up
Larval CNS27 ± 104 of 4 0.23Down
Larval Salivary gland8 ± 20 of 4 0.07Down
Larval midgut4 ± 00 of 4 0.04Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut35 ± 54 of 4 0.30Down
Larval fat body589 ± 644 of 4 4.90Up
Larval trachea26 ± 61 of 4 0.22Down
Larval carcass29 ± 24 of 4 0.25Down
S2 cells (growing)3 ± 10 of 4 0.03Down
Whole fly120 ± 44 of 4

Looking for FBgn0031563. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime