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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031566 through 18771 annotations produced 1 hits



(CG2818):

Annotation Number : CG2818
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031566
Gbrowse : chr2L:3713373-3716813 (+) // 100.0 //
Probeset : 1634381_a_at
Accessions : protein= NP_608804; /// NP_722936;, nucleotide= NM_134960; /// NM_164553;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // inferred
FlyMine data for FBgn0031566.
BDGP gene expression has embryonic in situ data for CG2818: 12 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0031566 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain213 34 of 4 1.40Up
Head130 84 of 4 0.90None
Eye104 34 of 4 0.71Down
Thoracicoabdominal ganglion160 34 of 4 1.10None
Salivary gland132 24 of 4 0.90Down
Crop158 34 of 4 1.10None
Midgut236 94 of 4 1.60Up
Tubule329 54 of 4 2.20Up
Hindgut139 44 of 4 0.90None
Heart152 74 of 4 1.03None
Fat body209 194 of 4 1.41Up
Ovary234 54 of 4 1.60Up
Testis93 34 of 4 0.60Down
Male accessory glands115 24 of 4 0.80Down
Virgin spermatheca296 54 of 4 2.00Up
Mated spermatheca253 174 of 4 1.71Up
Adult carcass142 44 of 4 1.00None
Larval CNS175 94 of 4 1.18Up
Larval Salivary gland156 104 of 4 1.06None
Larval midgut293 124 of 4 1.98Up
Larval tubule942 354 of 4 6.40Up
Larval hindgut194 84 of 4 1.31Up
Larval fat body285 174 of 4 1.90Up
Larval trachea105 104 of 4 0.71Down
Larval carcass179 134 of 4 1.21None
S2 cells (growing)168 34 of 4 1.14Up
Whole fly148 44 of 4

Looking for FBgn0031566. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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