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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031571 through 18771 annotations produced 1 hits



(CG3921):

Annotation Number : CG3921
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031571
Gbrowse : chr2L:3790662-3802245 (+) // 100.0 //
Probeset : 1634283_at
Accessions : protein= NP_608808;, nucleotide= NM_134964;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from el
FlyMine data for FBgn0031571.
Homophila reports that CG3921 is a close match (5e-12) to human gene MSR1 (NP_619729), a gene associated with Prostate cancer, hereditary, 176807 (3).
VDRC has 2 RNAi stocks for FBgn0031571 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 11 of 4 0.80None
Head8 ± 10 of 4 0.80None
Eye14 ± 22 of 4 1.32None
Thoracicoabdominal ganglion31 ± 24 of 4 2.80Up
Salivary gland9 ± 40 of 4 0.85None
Crop35 ± 24 of 4 3.20Up
Midgut85 ± 34 of 4 7.60Up
Tubule21 ± 42 of 4 1.90Up
Hindgut18 ± 23 of 4 1.70None
Heart2 ± 10 of 4 0.19None
Fat body4 ± 10 of 4 0.37None
Ovary5 ± 10 of 4 0.50None
Testis9 ± 10 of 4 0.80None
Male accessory glands9 ± 20 of 4 0.80None
Virgin spermatheca3 ± 10 of 4 0.35None
Mated spermatheca5 ± 10 of 4 0.46None
Adult carcass16 ± 20 of 4 1.40None
Larval CNS14 ± 14 of 4 1.33None
Larval Salivary gland28 ± 21 of 4 2.54Up
Larval midgut71 ± 62 of 4 6.36Up
Larval tubule42 ± 24 of 4 3.80Up
Larval hindgut39 ± 14 of 4 3.49Up
Larval fat body4 ± 10 of 4 0.40None
Larval trachea83 ± 174 of 4 7.46Up
Larval carcass25 ± 21 of 4 2.26Up
S2 cells (growing)1 ± 00 of 4 0.17None
Whole fly11 ± 31 of 4

Looking for FBgn0031571. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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