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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031579 through 18771 annotations produced 1 hits



(CG15422):

Annotation Number : CG15422
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031579
Gbrowse : chr2L:4005055-4005370 (+) // 100.0 //
Probeset : 1640827_at
Accessions : protein= NP_608814;, nucleotide= NM_134970;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031579.
BioGrid reports that CG15422 interacts with CG17018 CG17600 CG17777 CG2845 CG5454 CG7080 CG7381 CG8086 CG8541 CG15422 CG41099 CG31302 CG32016 CG4220 CG4818 CG5099 CG6544 CG7021 CG7716 CG8192 CG8216 CG9654 .
VDRC has 1 RNAi stocks for FBgn0031579 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 00 of 4 0.00Down
Head9 31 of 4 0.00Down
Eye4 10 of 4 0.02Down
Thoracicoabdominal ganglion7 20 of 4 0.00Down
Salivary gland10 30 of 4 0.05Down
Crop26 23 of 4 0.10Down
Midgut2411 504 of 412.10Up
Tubule24 41 of 4 0.10Down
Hindgut222 174 of 4 1.10None
Heart2 00 of 4 0.01Down
Fat body19 90 of 4 0.10Down
Ovary14 11 of 4 0.10Down
Testis19 04 of 4 0.10Down
Male accessory glands5 10 of 4 0.00Down
Virgin spermatheca23 23 of 4 0.12Down
Mated spermatheca22 32 of 4 0.11Down
Adult carcass10 50 of 4 0.10Down
Larval CNS11 51 of 4 0.06Down
Larval Salivary gland13 20 of 4 0.07Down
Larval midgut2870 964 of 414.43Up
Larval tubule32 72 of 4 0.20Down
Larval hindgut235 124 of 4 1.18None
Larval fat body7 10 of 4 0.00Down
Larval trachea8 50 of 4 0.04Down
Larval carcass2 00 of 4 0.01Down
S2 cells (growing)13 10 of 4 0.07Down
Whole fly198 444 of 4

Looking for FBgn0031579. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime