FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031580 through 18771 annotations produced 1 hits

(CG15423):

Annotation Number : CG15423
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031580
Gbrowse : chr2L:4006112-4006436 (+) // 100.0 //
Probeset : 1637589_at
Accessions : protein= NP_608815;, nucleotide= NM_134971;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031580.
BioGrid reports that CG15423 interacts with CG33193 CG4818 CG17018 CG3929 CG4276 CG9083 .
TRiP has 1 RNAi stocks for FBgn0031580 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031580 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	1 of 4	0.00	Down
Head	11 ± 3	1 of 4	0.10	Down
Eye	12 ± 3	0 of 4	0.10	Down
Thoracicoabdominal ganglion	7 ± 1	0 of 4	0.10	Down
Salivary gland	27 ± 5	1 of 4	0.23	Down
Crop	14 ± 4	0 of 4	0.10	Down
Midgut	2014 ± 31	4 of 4	17.00	Up
Tubule	9 ± 0	0 of 4	0.10	Down
Hindgut	17 ± 1	2 of 4	0.10	Down
Heart	12 ± 1	1 of 4	0.10	Down
Fat body	29 ± 13	0 of 4	0.25	Down
Ovary	7 ± 1	0 of 4	0.10	Down
Testis	9 ± 1	3 of 4	0.10	Down
Male accessory glands	16 ± 5	0 of 4	0.10	Down
Virgin spermatheca	28 ± 3	4 of 4	0.24	Down
Mated spermatheca	21 ± 5	3 of 4	0.18	Down
Adult carcass	16 ± 2	0 of 4	0.10	Down
Larval CNS	17 ± 8	1 of 4	0.15	Down
Larval Salivary gland	17 ± 1	0 of 4	0.15	Down
Larval midgut	3281 ± 135	4 of 4	27.69	Up
Larval tubule	5 ± 2	0 of 4	0.00	Down
Larval hindgut	56 ± 11	4 of 4	0.48	None
Larval fat body	17 ± 3	1 of 4	0.10	Down
Larval trachea	10 ± 5	0 of 4	0.09	Down
Larval carcass	13 ± 1	1 of 4	0.11	Down
S2 cells (growing)	9 ± 1	0 of 4	0.08	Down
Whole fly	118 ± 26	4 of 4

Looking for FBgn0031580. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720