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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031585 through 18771 annotations produced 1 hits


(CG2955):

Annotation Number : CG2955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031585
Gbrowse : chr2L:4149278-4151203 (+) // 100.0 //
Probeset : 1641418_at
Accessions : protein= NP_608817;, nucleotide= NM_134973;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0031585.
BDGP gene expression has embryonic in situ data for CG2955: 2 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031585 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 11 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland11 ± 30 of 4 0.07Down
Crop2 ± 10 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart3 ± 11 of 4 0.02Down
Fat body7 ± 21 of 4 0.04Down
Ovary3 ± 02 of 4 0.00Down
Testis1613 ± 584 of 410.10Up
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.02Down
Mated spermatheca3 ± 10 of 4 0.02Down
Adult carcass8 ± 32 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland2 ± 10 of 4 0.01Down
Larval midgut5 ± 10 of 4 0.03Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut3 ± 11 of 4 0.02Down
Larval fat body248 ± 1564 of 4 1.60None
Larval trachea8 ± 112 of 4 0.05Down
Larval carcass5 ± 11 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly160 ± 84 of 4

Looking for FBgn0031585. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime