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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031589 through 18771 annotations produced 1 hits



(CG3714):

Annotation Number : CG3714
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031589
Gbrowse : chr2L:4189496-4198058 (-) // 100.0 //
Probeset : 1638844_s_at
Accessions : protein= NP_001097077; /// NP_608818; /// NP_722961; /// NP_722962; /// NP_722963; /// NP_722964;, nucleotide= NM_001103607; /// NM_134974; /// NM_164572; /// NM_164573; /// NM_164574; /// NM_164575;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from electronic annotation /// 00
FlyMine data for FBgn0031589.
BDGP gene expression has embryonic in situ data for CG3714: 11 pix of staining in 8 body parts.
VDRC has 2 RNAi stocks for FBgn0031589 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain275 ± 164 of 4 1.10None
Head396 ± 604 of 4 1.50None
Eye272 ± 154 of 4 1.05None
Thoracicoabdominal ganglion183 ± 74 of 4 0.70None
Salivary gland247 ± 194 of 4 0.95None
Crop705 ± 314 of 4 2.70Up
Midgut217 ± 94 of 4 0.80None
Tubule3887 ± 154 of 414.90Up
Hindgut283 ± 164 of 4 1.10None
Heart441 ± 124 of 4 1.69Up
Fat body575 ± 594 of 4 2.21Up
Ovary120 ± 04 of 4 0.50Down
Testis13 ± 04 of 4 0.10Down
Male accessory glands113 ± 64 of 4 0.40Down
Virgin spermatheca336 ± 174 of 4 1.29None
Mated spermatheca323 ± 164 of 4 1.24None
Adult carcass415 ± 684 of 4 1.60None
Larval CNS242 ± 394 of 4 0.93None
Larval Salivary gland123 ± 34 of 4 0.47Down
Larval midgut173 ± 304 of 4 0.66None
Larval tubule3015 ± 574 of 411.60Up
Larval hindgut208 ± 184 of 4 0.80None
Larval fat body616 ± 544 of 4 2.40Up
Larval trachea192 ± 174 of 4 0.74None
Larval carcass533 ± 424 of 4 2.04Up
S2 cells (growing)302 ± 74 of 4 1.16None
Whole fly261 ± 274 of 4

Looking for FBgn0031589. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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