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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031590 through 18771 annotations produced 1 hits



(CG3702):

Annotation Number : CG3702
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031590
Gbrowse : chr2L:4224649-4227097 (-) // 100.0 //
Probeset : 1623434_at
Accessions : protein= NP_608819;, nucleotide= NM_134975;
FlyMine data for FBgn0031590.
BDGP gene expression has embryonic in situ data for CG3702: 4 pix of staining in 1 body parts.
BioGrid reports that CG3702 interacts with CG9481 .
VDRC has 1 RNAi stocks for FBgn0031590 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain383 74 of 4 0.90None
Head304 194 of 4 0.70Down
Eye277 44 of 4 0.65Down
Thoracicoabdominal ganglion398 84 of 4 0.90None
Salivary gland385 184 of 4 0.90None
Crop311 114 of 4 0.70Down
Midgut703 94 of 4 1.60Up
Tubule1149 124 of 4 2.70Up
Hindgut430 74 of 4 1.00None
Heart359 104 of 4 0.84Down
Fat body398 384 of 4 0.93None
Ovary521 134 of 4 1.20Up
Testis900 154 of 4 2.10Up
Male accessory glands395 104 of 4 0.90None
Virgin spermatheca266 94 of 4 0.62Down
Mated spermatheca255 134 of 4 0.59Down
Adult carcass356 164 of 4 0.80Down
Larval CNS361 94 of 4 0.84Down
Larval Salivary gland709 64 of 4 1.65Up
Larval midgut624 254 of 4 1.45Up
Larval tubule1240 204 of 4 2.90Up
Larval hindgut545 124 of 4 1.27Up
Larval fat body467 104 of 4 1.10None
Larval trachea322 334 of 4 0.75Down
Larval carcass397 164 of 4 0.93None
S2 cells (growing)659 64 of 4 1.53Up
Whole fly430 204 of 4

Looking for FBgn0031590. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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