FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031590 through 18771 annotations produced 1 hits

(CG3702):

Annotation Number : CG3702
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031590
Gbrowse : chr2L:4224649-4227097 (-) // 100.0 //
Probeset : 1623434_at
Accessions : protein= NP_608819;, nucleotide= NM_134975;
FlyMine data for FBgn0031590.
BDGP gene expression has embryonic in situ data for CG3702: 4 pix of staining in 1 body parts.
BioGrid reports that CG3702 interacts with CG9481 .
VDRC has 1 RNAi stocks for FBgn0031590 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	383 ± 7	4 of 4	0.90	None
Head	304 ± 19	4 of 4	0.70	Down
Eye	277 ± 4	4 of 4	0.65	Down
Thoracicoabdominal ganglion	398 ± 8	4 of 4	0.90	None
Salivary gland	385 ± 18	4 of 4	0.90	None
Crop	311 ± 11	4 of 4	0.70	Down
Midgut	703 ± 9	4 of 4	1.60	Up
Tubule	1149 ± 12	4 of 4	2.70	Up
Hindgut	430 ± 7	4 of 4	1.00	None
Heart	359 ± 10	4 of 4	0.84	Down
Fat body	398 ± 38	4 of 4	0.93	None
Ovary	521 ± 13	4 of 4	1.20	Up
Testis	900 ± 15	4 of 4	2.10	Up
Male accessory glands	395 ± 10	4 of 4	0.90	None
Virgin spermatheca	266 ± 9	4 of 4	0.62	Down
Mated spermatheca	255 ± 13	4 of 4	0.59	Down
Adult carcass	356 ± 16	4 of 4	0.80	Down
Larval CNS	361 ± 9	4 of 4	0.84	Down
Larval Salivary gland	709 ± 6	4 of 4	1.65	Up
Larval midgut	624 ± 25	4 of 4	1.45	Up
Larval tubule	1240 ± 20	4 of 4	2.90	Up
Larval hindgut	545 ± 12	4 of 4	1.27	Up
Larval fat body	467 ± 10	4 of 4	1.10	None
Larval trachea	322 ± 33	4 of 4	0.75	Down
Larval carcass	397 ± 16	4 of 4	0.93	None
S2 cells (growing)	659 ± 6	4 of 4	1.53	Up
Whole fly	430 ± 20	4 of 4

Looking for FBgn0031590. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720