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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031600 through 18771 annotations produced 1 hits



(CG3652):

Annotation Number : CG3652
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031600
Gbrowse : chr2L:4392769-4393814 (-) // 100.0 //
Probeset : 1630332_at
Accessions : protein= NP_608828;, nucleotide= NM_134984;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031600.
BioGrid reports that CG3652 interacts with CG3811 .
VDRC has 2 RNAi stocks for FBgn0031600 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain280 54 of 4 1.10None
Head223 64 of 4 0.90None
Eye366 174 of 4 1.46Up
Thoracicoabdominal ganglion246 114 of 4 1.00None
Salivary gland1038 304 of 4 4.14Up
Crop161 104 of 4 0.60Down
Midgut405 84 of 4 1.60Up
Tubule181 34 of 4 0.70Down
Hindgut272 54 of 4 1.10None
Heart203 74 of 4 0.81Down
Fat body249 204 of 4 0.99None
Ovary384 54 of 4 1.50Up
Testis174 44 of 4 0.70Down
Male accessory glands800 514 of 4 3.20Up
Virgin spermatheca398 194 of 4 1.59Up
Mated spermatheca425 104 of 4 1.70Up
Adult carcass205 64 of 4 0.80Down
Larval CNS244 174 of 4 0.97None
Larval Salivary gland1400 784 of 4 5.59Up
Larval midgut424 144 of 4 1.69Up
Larval tubule384 64 of 4 1.50Up
Larval hindgut230 124 of 4 0.92None
Larval fat body220 164 of 4 0.90None
Larval trachea215 274 of 4 0.86None
Larval carcass211 64 of 4 0.84Down
S2 cells (growing)482 44 of 4 1.93Up
Whole fly250 124 of 4

Looking for FBgn0031600. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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