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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031601 through 18771 annotations produced 1 hits



CG3058 (Dim1):

Annotation Number : CG3058
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031601
Gbrowse : chr2L:4403254-4403955 (+) // 100.0 //
Probeset : 1627900_at
Accessions : protein= NP_608830;, nucleotide= NM_134986;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0007052 // mitotic spindle organization // infer
FlyMine data for FBgn0031601.
BDGP gene expression has embryonic in situ data for CG3058: 10 pix of staining in 3 body parts.
BioGrid reports that CG3058 interacts with CG7716 CG8925 .
VDRC has 3 RNAi stocks for FBgn0031601 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain212 34 of 4 1.40Up
Head122 44 of 4 0.80None
Eye168 34 of 4 1.15None
Thoracicoabdominal ganglion279 124 of 4 1.90Up
Salivary gland219 44 of 4 1.49Up
Crop95 54 of 4 0.60Down
Midgut202 84 of 4 1.40Up
Tubule131 34 of 4 0.90Down
Hindgut118 14 of 4 0.80None
Heart119 44 of 4 0.81None
Fat body105 44 of 4 0.72Down
Ovary193 24 of 4 1.30Up
Testis161 84 of 4 1.10None
Male accessory glands122 54 of 4 0.80None
Virgin spermatheca106 34 of 4 0.72Down
Mated spermatheca105 34 of 4 0.72Down
Adult carcass97 74 of 4 0.70Down
Larval CNS244 224 of 4 1.66Up
Larval Salivary gland128 74 of 4 0.87None
Larval midgut116 54 of 4 0.80None
Larval tubule203 64 of 4 1.40Up
Larval hindgut91 54 of 4 0.62Down
Larval fat body140 74 of 4 1.00None
Larval trachea174 94 of 4 1.19None
Larval carcass94 64 of 4 0.64Down
S2 cells (growing)130 24 of 4 0.89None
Whole fly146 104 of 4

Looking for FBgn0031601. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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