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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031603 through 18771 annotations produced 1 hits


Annotation Number : CG15432
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031603
Gbrowse : chr2L:4442497-4442854 (+) // 100.0 //
Probeset : 1628516_at
Accessions : protein= NP_608832;, nucleotide= NM_134988;
FlyMine data for FBgn0031603.
VDRC has 3 RNAi stocks for FBgn0031603 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain152 54 of 4 2.30Up
Head88 24 of 4 1.30Up
Eye61 44 of 4 0.93None
Thoracicoabdominal ganglion163 94 of 4 2.50Up
Salivary gland95 124 of 4 1.46None
Crop88 44 of 4 1.40Up
Midgut67 24 of 4 1.00None
Tubule26 04 of 4 0.40Down
Hindgut73 24 of 4 1.10None
Heart58 34 of 4 0.89None
Fat body58 104 of 4 0.90None
Ovary110 24 of 4 1.70Up
Testis59 44 of 4 0.90None
Male accessory glands240 114 of 4 3.70Up
Virgin spermatheca59 34 of 4 0.91None
Mated spermatheca69 64 of 4 1.06None
Adult carcass58 24 of 4 0.90None
Larval CNS238 214 of 4 3.65Up
Larval Salivary gland113 74 of 4 1.74Up
Larval midgut74 34 of 4 1.14None
Larval tubule75 34 of 4 1.20None
Larval hindgut78 14 of 4 1.20None
Larval fat body100 34 of 4 1.50Up
Larval trachea101 34 of 4 1.55Up
Larval carcass68 44 of 4 1.05None
S2 cells (growing)104 24 of 4 1.60Up
Whole fly65 54 of 4

Looking for FBgn0031603. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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