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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031606 through 18771 annotations produced 1 hits



(CG15439):

Annotation Number : CG15439
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031606
Gbrowse : chr2L:4449288-4453004 (-) // 100.0 //
Probeset : 1640456_at
Accessions : protein= NP_608836;, nucleotide= NM_134992;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0031606.
BDGP gene expression has embryonic in situ data for CG15439: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031606 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 ± 24 of 4 0.90None
Head22 ± 13 of 4 0.50Down
Eye26 ± 14 of 4 0.55Down
Thoracicoabdominal ganglion34 ± 24 of 4 0.70Down
Salivary gland29 ± 30 of 4 0.60Down
Crop20 ± 43 of 4 0.40Down
Midgut30 ± 20 of 4 0.60Down
Tubule21 ± 12 of 4 0.40Down
Hindgut21 ± 31 of 4 0.50Down
Heart20 ± 23 of 4 0.42Down
Fat body23 ± 13 of 4 0.49Down
Ovary95 ± 34 of 4 2.00Up
Testis17 ± 12 of 4 0.40Down
Male accessory glands38 ± 44 of 4 0.80None
Virgin spermatheca31 ± 14 of 4 0.66Down
Mated spermatheca39 ± 34 of 4 0.82None
Adult carcass25 ± 11 of 4 0.50Down
Larval CNS116 ± 34 of 4 2.43Up
Larval Salivary gland53 ± 63 of 4 1.11None
Larval midgut20 ± 40 of 4 0.42Down
Larval tubule21 ± 13 of 4 0.50Down
Larval hindgut27 ± 34 of 4 0.58Down
Larval fat body34 ± 34 of 4 0.70Down
Larval trachea60 ± 54 of 4 1.27Up
Larval carcass42 ± 34 of 4 0.88None
S2 cells (growing)64 ± 04 of 4 1.34Up
Whole fly47 ± 44 of 4

Looking for FBgn0031606. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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