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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031609 through 18771 annotations produced 1 hits



(CG15443):

Annotation Number : CG15443
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031609
Gbrowse : chr2L:4461630-4463437 (-) // 100.0 //
Probeset : 1636352_at
Accessions : protein= NP_608839;, nucleotide= NM_134995;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0031609.
BioGrid reports that CG15443 interacts with CG1821 CG2168 CG2171 CG3186 CG8359 CG9638 .
VDRC has 1 RNAi stocks for FBgn0031609 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain114 ± 14 of 4 1.00None
Head79 ± 14 of 4 0.70Down
Eye190 ± 104 of 4 1.75Up
Thoracicoabdominal ganglion98 ± 34 of 4 0.90None
Salivary gland152 ± 94 of 4 1.39Up
Crop93 ± 44 of 4 0.90None
Midgut69 ± 14 of 4 0.60Down
Tubule92 ± 54 of 4 0.80Down
Hindgut81 ± 54 of 4 0.70Down
Heart86 ± 34 of 4 0.79Down
Fat body84 ± 34 of 4 0.77Down
Ovary205 ± 24 of 4 1.90Up
Testis54 ± 24 of 4 0.50Down
Male accessory glands200 ± 94 of 4 1.80Up
Virgin spermatheca76 ± 64 of 4 0.70Down
Mated spermatheca73 ± 14 of 4 0.67Down
Adult carcass60 ± 24 of 4 0.60Down
Larval CNS155 ± 44 of 4 1.43Up
Larval Salivary gland144 ± 44 of 4 1.32Up
Larval midgut65 ± 14 of 4 0.60Down
Larval tubule105 ± 34 of 4 1.00None
Larval hindgut81 ± 34 of 4 0.75Down
Larval fat body109 ± 104 of 4 1.00None
Larval trachea132 ± 54 of 4 1.22Up
Larval carcass51 ± 24 of 4 0.47Down
S2 cells (growing)119 ± 44 of 4 1.10None
Whole fly109 ± 54 of 4

Looking for FBgn0031609. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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