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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031617 through 18771 annotations produced 1 hits


(CG15635):

Annotation Number : CG15635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031617
Gbrowse : chr2L:4643115-4646472 (+) // 100.0 //
Probeset : 1638908_at
Accessions : protein= NP_608846;, nucleotide= NM_135002;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // infe
FlyMine data for FBgn0031617.
VDRC has 2 RNAi stocks for FBgn0031617 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye3 ± 11 of 4 0.02Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.00Down
Salivary gland13 ± 40 of 4 0.08Down
Crop9 ± 10 of 4 0.10Down
Midgut14 ± 00 of 4 0.10Down
Tubule4 ± 10 of 4 0.00Down
Hindgut9 ± 10 of 4 0.10Down
Heart4 ± 10 of 4 0.03Down
Fat body8 ± 40 of 4 0.05Down
Ovary5 ± 10 of 4 0.00Down
Testis17 ± 72 of 4 0.10Down
Male accessory glands9334 ± 2264 of 459.50Up
Virgin spermatheca3 ± 00 of 4 0.02Down
Mated spermatheca9 ± 20 of 4 0.06Down
Adult carcass35 ± 111 of 4 0.20Down
Larval CNS4 ± 30 of 4 0.03Down
Larval Salivary gland6 ± 20 of 4 0.04Down
Larval midgut12 ± 10 of 4 0.08Down
Larval tubule6 ± 10 of 4 0.00Down
Larval hindgut5 ± 10 of 4 0.04Down
Larval fat body8 ± 20 of 4 0.10Down
Larval trachea4 ± 20 of 4 0.03Down
Larval carcass5 ± 10 of 4 0.04Down
S2 cells (growing)5 ± 10 of 4 0.03Down
Whole fly157 ± 134 of 4

Looking for FBgn0031617. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime