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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031619 through 18771 annotations produced 1 hits


Annotation Number : CG3355
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031619
Gbrowse : chr2L:4651402-4652877 (+) // 100.0 //
Probeset : 1626903_at
Accessions : protein= NP_608848; /// NP_723001;, nucleotide= NM_135004; /// NM_164594;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0031619.
BDGP gene expression has embryonic in situ data for CG3355: 4 pix of staining in 1 body parts.
Homophila reports that CG3355 is a close match (9e-11) to human gene PRSS2;TRY2 (NP_002761), a gene associated with {Pancreatitis, chronic, protection against} (3).
BioGrid reports that CG3355 interacts with CG5733 .
VDRC has 3 RNAi stocks for FBgn0031619 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 2.50None
Head1 10 of 4 2.30None
Eye1 00 of 4 1.73None
Thoracicoabdominal ganglion2 10 of 4 3.60None
Salivary gland6 20 of 4 8.07None
Crop5 20 of 4 7.80None
Midgut2 10 of 4 3.80None
Tubule3 00 of 4 4.30Up
Hindgut1 00 of 4 2.20None
Heart0 00 of 4 1.13None
Fat body5 50 of 4 7.67None
Ovary2 10 of 4 3.20None
Testis2 00 of 4 3.10None
Male accessory glands23 11 of 431.00Up
Virgin spermatheca2 00 of 4 3.37None
Mated spermatheca5 30 of 4 7.13None
Adult carcass2 00 of 4 2.60None
Larval CNS4 20 of 4 6.20Up
Larval Salivary gland2 00 of 4 3.17None
Larval midgut1 00 of 4 1.57None
Larval tubule1 00 of 4 1.70None
Larval hindgut3 20 of 4 4.30None
Larval fat body10 30 of 414.00None
Larval trachea77 394 of 4103.23Up
Larval carcass30 31 of 440.60Up
S2 cells (growing)2 00 of 4 3.97None
Whole fly0 00 of 4

Looking for FBgn0031619. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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