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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031620 through 18771 annotations produced 1 hits



(CG11929):

Annotation Number : CG11929
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031620
Gbrowse : chr2L:4682676-4687235 (+) // 100.0 //
Probeset : 1640196_at
Accessions : protein= NP_608849;, nucleotide= NM_135005;
FlyMine data for FBgn0031620.
BDGP gene expression has embryonic in situ data for CG11929: 4 pix of staining in 1 body parts.
BioGrid reports that CG11929 interacts with CG6998 .
VDRC has 3 RNAi stocks for FBgn0031620 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head6 ± 12 of 4 0.10Down
Eye3 ± 01 of 4 0.08Down
Thoracicoabdominal ganglion5 ± 20 of 4 0.10Down
Salivary gland12 ± 60 of 4 0.25Down
Crop7 ± 11 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule8 ± 01 of 4 0.20Down
Hindgut9 ± 13 of 4 0.20Down
Heart4 ± 02 of 4 0.10Down
Fat body15 ± 42 of 4 0.32Down
Ovary4 ± 00 of 4 0.10Down
Testis614 ± 194 of 412.60Up
Male accessory glands7 ± 20 of 4 0.20Down
Virgin spermatheca4 ± 10 of 4 0.09Down
Mated spermatheca7 ± 21 of 4 0.15Down
Adult carcass15 ± 42 of 4 0.30Down
Larval CNS4 ± 20 of 4 0.10Down
Larval Salivary gland7 ± 10 of 4 0.16Down
Larval midgut5 ± 10 of 4 0.12Down
Larval tubule5 ± 00 of 4 0.10Down
Larval hindgut6 ± 02 of 4 0.14Down
Larval fat body107 ± 544 of 4 2.20None
Larval trachea4 ± 20 of 4 0.09Down
Larval carcass6 ± 11 of 4 0.14Down
S2 cells (growing)174 ± 54 of 4 3.59Up
Whole fly48 ± 14 of 4

Looking for FBgn0031620. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime