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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031621 through 18771 annotations produced 1 hits


Annotation Number : CG15634
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031621
Gbrowse : chr2L:4687512-4688956 (+) // 100.0 //
Probeset : 1623696_at
Accessions : protein= NP_608850;, nucleotide= NM_135006;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031621.
BDGP gene expression has embryonic in situ data for CG15634: 16 pix of staining in 3 body parts.
BioGrid reports that CG15634 interacts with CG2043 CG3560 CG8190 CG8640 CG9291 CG2467 CG32068 CG4376 CG5333 CG6043 CG6779 CG7404 CG7437 CG7892 CG9665 .
VDRC has 1 RNAi stocks for FBgn0031621 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 1.20None
Head1 00 of 4 0.60None
Eye2 10 of 4 0.74None
Thoracicoabdominal ganglion2 10 of 4 1.00None
Salivary gland11 70 of 4 4.13None
Crop3 10 of 4 1.30None
Midgut1 00 of 4 0.50None
Tubule1 00 of 4 0.50Down
Hindgut2 00 of 4 0.90None
Heart1 00 of 4 0.45None
Fat body7 31 of 4 2.83None
Ovary1 00 of 4 0.50None
Testis49 44 of 417.70Up
Male accessory glands3 10 of 4 1.10None
Virgin spermatheca4 10 of 4 1.71None
Mated spermatheca9 31 of 4 3.21None
Adult carcass3 20 of 4 1.20None
Larval CNS2 20 of 4 1.01None
Larval Salivary gland3 10 of 4 1.18None
Larval midgut3 10 of 4 1.07None
Larval tubule3 20 of 4 1.10None
Larval hindgut3 00 of 4 1.22None
Larval fat body6 21 of 4 2.50None
Larval trachea2 20 of 4 0.77None
Larval carcass1 00 of 4 0.43None
S2 cells (growing)88 54 of 431.75Up
Whole fly2 00 of 4

Looking for FBgn0031621. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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