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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031622 through 18771 annotations produced 1 hits



(CG3251):

Annotation Number : CG3251
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031622
Gbrowse : chr2L:4689059-4690703 (-) // 100.0 //
Probeset : 1640942_at
Accessions : protein= NP_608851;, nucleotide= NM_135007;
FlyMine data for FBgn0031622.
VDRC has 3 RNAi stocks for FBgn0031622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.20None
Head5 10 of 4 1.20None
Eye3 10 of 4 0.75None
Thoracicoabdominal ganglion4 10 of 4 1.00None
Salivary gland14 40 of 4 3.49None
Crop6 21 of 4 1.50None
Midgut3 00 of 4 0.80None
Tubule4 00 of 4 1.00None
Hindgut6 10 of 4 1.50None
Heart2 00 of 4 0.65None
Fat body11 00 of 4 2.64Up
Ovary2 01 of 4 0.70None
Testis68 24 of 416.60Up
Male accessory glands6 20 of 4 1.50None
Virgin spermatheca7 21 of 4 1.80None
Mated spermatheca4 21 of 4 1.16None
Adult carcass12 30 of 4 3.00None
Larval CNS4 10 of 4 1.01None
Larval Salivary gland5 20 of 4 1.40None
Larval midgut3 10 of 4 0.83None
Larval tubule4 10 of 4 1.20None
Larval hindgut5 11 of 4 1.31None
Larval fat body21 33 of 4 5.10Up
Larval trachea3 21 of 4 0.92None
Larval carcass4 00 of 4 1.10None
S2 cells (growing)766 84 of 4184.67Up
Whole fly4 10 of 4

Looking for FBgn0031622. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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