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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031626 through 18771 annotations produced 1 hits


(CG15631):

Annotation Number : CG15631
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031626
Gbrowse : chr2L:4732412-4734458 (-) // 99.8 //
Probeset : 1637351_at
Accessions : protein= NP_608855;, nucleotide= NM_135011;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031626.
BioGrid reports that CG15631 interacts with CG15676 CG2257 CG31036 CG32086 CG3315 CG3323 CG4006 CG5376 CG7371 CG7484 CG9383 CG15771 CG16747 CG1676 CG17050 CG17230 CG17265 CG17342 CG17347 CG17894 CG1848 CG2021 CG2046 CG2851 CG30011 CG3201 CG32100 CG12022 CG32428 CG33087 CG33156 CG33205 CG3668 CG4216 CG4394 CG4896 CG5149 CG5333 CG5442 CG5680 CG5709 CG6315 CG6353 CG6416 CG6808 CG6904 CG6998 CG7238 CG7425 CG7605 CG7761 CG7793 CG7856 CG7911 CG7928 CG8344 CG8609 CG9015 CG9016 CG9238 Dmel CR31838 .
VDRC has 3 RNAi stocks for FBgn0031626 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.00Down
Eye3 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion6 ± 21 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.10Down
Crop5 ± 20 of 4 0.10Down
Midgut3 ± 00 of 4 0.10Down
Tubule3 ± 10 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.03Down
Fat body5 ± 31 of 4 0.08Down
Ovary3 ± 00 of 4 0.10Down
Testis880 ± 314 of 412.80Up
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca8 ± 01 of 4 0.12Down
Mated spermatheca5 ± 11 of 4 0.08Down
Adult carcass7 ± 20 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.06Down
Larval Salivary gland5 ± 11 of 4 0.08Down
Larval midgut13 ± 02 of 4 0.20Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.03Down
Larval fat body146 ± 754 of 4 2.10None
Larval trachea6 ± 41 of 4 0.10Down
Larval carcass4 ± 10 of 4 0.06Down
S2 cells (growing)4 ± 11 of 4 0.07Down
Whole fly69 ± 94 of 4

Looking for FBgn0031626. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime