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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031632 through 18771 annotations produced 2 hits



(CG15628):

Annotation Number : CG15628
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031632
Gbrowse : chr2L:4821775-4828552 (+) // 100.0 //
Probeset : 1636248_at
Accessions : protein= NP_608861;, nucleotide= NM_135017;
Interpro : 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity /
FlyMine data for FBgn0031632.
TRiP has 1 RNAi stocks for FBgn0031632 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031632 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain471 134 of 4 3.90Up
Head131 94 of 4 1.10None
Eye93 84 of 4 0.78None
Thoracicoabdominal ganglion938 204 of 4 7.80Up
Salivary gland6 20 of 4 0.06Down
Crop7 21 of 4 0.10Down
Midgut3 00 of 4 0.00Down
Tubule6 10 of 4 0.10Down
Hindgut2 01 of 4 0.00Down
Heart7 02 of 4 0.07Down
Fat body14 24 of 4 0.12Down
Ovary2 00 of 4 0.00Down
Testis11 14 of 4 0.10Down
Male accessory glands3 11 of 4 0.00Down
Virgin spermatheca12 13 of 4 0.10Down
Mated spermatheca24 74 of 4 0.20Down
Adult carcass409 264 of 4 3.40Up
Larval CNS356 434 of 4 2.97Up
Larval Salivary gland5 22 of 4 0.04Down
Larval midgut5 02 of 4 0.05Down
Larval tubule6 01 of 4 0.00Down
Larval hindgut5 11 of 4 0.05Down
Larval fat body5 11 of 4 0.00Down
Larval trachea4 21 of 4 0.04Down
Larval carcass7 13 of 4 0.06Down
S2 cells (growing)3 01 of 4 0.03Down
Whole fly120 94 of 4



(CG15628):

Annotation Number : HDC00793
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031632
Gbrowse : chr2L:4821269-4821985 (+) // 100.0 //
Probeset : 1631975_at
Accessions : protein= NP_608861;, nucleotide= NM_135017;
Interpro : 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity /
FlyMine data for FBgn0031632.
TRiP has 1 RNAi stocks for FBgn0031632 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031632 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 1.20None
Head3 10 of 4 0.90None
Eye4 20 of 4 1.33None
Thoracicoabdominal ganglion3 10 of 4 1.00None
Salivary gland11 50 of 4 3.42None
Crop3 20 of 4 1.20None
Midgut5 10 of 4 1.70None
Tubule6 10 of 4 2.00Up
Hindgut1 00 of 4 0.50None
Heart1 00 of 4 0.58None
Fat body2 20 of 4 0.59None
Ovary1 00 of 4 0.50None
Testis2 10 of 4 0.80None
Male accessory glands6 30 of 4 1.80None
Virgin spermatheca3 00 of 4 0.97None
Mated spermatheca1 00 of 4 0.43None
Adult carcass3 10 of 4 1.00None
Larval CNS0 00 of 4 0.28None
Larval Salivary gland5 20 of 4 1.56None
Larval midgut4 20 of 4 1.26None
Larval tubule5 10 of 4 1.80None
Larval hindgut1 00 of 4 0.45None
Larval fat body5 10 of 4 1.70None
Larval trachea2 20 of 4 0.80None
Larval carcass1 00 of 4 0.44None
S2 cells (growing)1 00 of 4 0.47None
Whole fly3 10 of 4

Looking for FBgn0031632. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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