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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031636 through 18771 annotations produced 1 hits



(CG12194):

Annotation Number : CG12194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031636
Gbrowse : chr2L:4839302-4841445 (+) // 100.0 //
Probeset : 1637632_at
Accessions : protein= NP_001162873; /// NP_608865;, nucleotide= NM_001169402; /// NM_135021;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031636.
BDGP gene expression has embryonic in situ data for CG12194: 7 pix of staining in 2 body parts.
BioGrid reports that CG12194 interacts with CG12437 .
VDRC has 3 RNAi stocks for FBgn0031636 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain798 ± 414 of 415.40Up
Head213 ± 164 of 4 4.10Up
Eye222 ± 94 of 4 4.29Up
Thoracicoabdominal ganglion507 ± 174 of 4 9.80Up
Salivary gland88 ± 264 of 4 1.71None
Crop2 ± 10 of 4 0.10Down
Midgut587 ± 204 of 411.40Up
Tubule7 ± 01 of 4 0.10Down
Hindgut219 ± 94 of 4 4.20Up
Heart218 ± 94 of 4 4.21Up
Fat body69 ± 164 of 4 1.34None
Ovary17 ± 14 of 4 0.30Down
Testis211 ± 94 of 4 4.10Up
Male accessory glands8 ± 21 of 4 0.20Down
Virgin spermatheca35 ± 34 of 4 0.68None
Mated spermatheca20 ± 14 of 4 0.40Down
Adult carcass43 ± 24 of 4 0.80None
Larval CNS122 ± 84 of 4 2.37Up
Larval Salivary gland14 ± 23 of 4 0.27Down
Larval midgut933 ± 1394 of 418.04Up
Larval tubule16 ± 14 of 4 0.30Down
Larval hindgut25 ± 34 of 4 0.49Down
Larval fat body53 ± 124 of 4 1.00None
Larval trachea6 ± 51 of 4 0.13Down
Larval carcass12 ± 11 of 4 0.23Down
S2 cells (growing)19 ± 04 of 4 0.37Down
Whole fly51 ± 74 of 4

Looking for FBgn0031636. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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