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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031637 through 18771 annotations produced 1 hits



(CG2950):

Annotation Number : CG2950
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031637
Gbrowse : chr2L:4842094-4847292 (-) // 100.0 //
Probeset : 1638173_s_at
Accessions : protein= NP_001162874; /// NP_608866; /// NP_723015; /// NP_723016;, nucleotide= NM_001169403; /// NM_135022; /// NM_164598; /// NM_164599;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotat
FlyMine data for FBgn0031637.
BioGrid reports that CG2950 interacts with CG32859 CG3225 CG8277 .
VDRC has 1 RNAi stocks for FBgn0031637 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain263 ± 44 of 4 1.20Up
Head387 ± 164 of 4 1.70Up
Eye737 ± 224 of 4 3.29Up
Thoracicoabdominal ganglion384 ± 84 of 4 1.70Up
Salivary gland305 ± 264 of 4 1.36Up
Crop915 ± 64 of 4 4.10Up
Midgut205 ± 104 of 4 0.90None
Tubule635 ± 514 of 4 2.80Up
Hindgut571 ± 134 of 4 2.60Up
Heart561 ± 214 of 4 2.51Up
Fat body253 ± 424 of 4 1.13None
Ovary72 ± 24 of 4 0.30Down
Testis121 ± 64 of 4 0.50Down
Male accessory glands179 ± 84 of 4 0.80Down
Virgin spermatheca146 ± 84 of 4 0.65Down
Mated spermatheca144 ± 64 of 4 0.65Down
Adult carcass531 ± 274 of 4 2.40Up
Larval CNS119 ± 104 of 4 0.53Down
Larval Salivary gland253 ± 174 of 4 1.13None
Larval midgut465 ± 194 of 4 2.08Up
Larval tubule959 ± 414 of 4 4.30Up
Larval hindgut632 ± 164 of 4 2.82Up
Larval fat body274 ± 234 of 4 1.20None
Larval trachea599 ± 864 of 4 2.68Up
Larval carcass670 ± 434 of 4 2.99Up
S2 cells (growing)268 ± 44 of 4 1.20Up
Whole fly223 ± 94 of 4

Looking for FBgn0031637. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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