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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031644 through 18771 annotations produced 1 hits



(CG15625):

Annotation Number : CG15625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031644
Gbrowse : chr2L:4889994-4891378 (+) // 100.0 //
Probeset : 1628479_at
Accessions : protein= NP_608872;, nucleotide= NM_135028;
FlyMine data for FBgn0031644.
BDGP gene expression has embryonic in situ data for CG15625: 6 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0031644 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head5 10 of 4 0.30Down
Eye3 21 of 4 0.16Down
Thoracicoabdominal ganglion7 00 of 4 0.40Down
Salivary gland19 62 of 4 0.96None
Crop7 10 of 4 0.40Down
Midgut6 00 of 4 0.30Down
Tubule4 00 of 4 0.20Down
Hindgut6 00 of 4 0.30Down
Heart5 10 of 4 0.25Down
Fat body17 123 of 4 0.88None
Ovary3 10 of 4 0.20Down
Testis191 84 of 4 9.60Up
Male accessory glands3 10 of 4 0.20Down
Virgin spermatheca16 14 of 4 0.83None
Mated spermatheca14 32 of 4 0.72None
Adult carcass6 10 of 4 0.30Down
Larval CNS15 53 of 4 0.80None
Larval Salivary gland5 10 of 4 0.30Down
Larval midgut8 11 of 4 0.43Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut5 10 of 4 0.29Down
Larval fat body23 93 of 4 1.20None
Larval trachea1 00 of 4 0.10Down
Larval carcass5 00 of 4 0.25Down
S2 cells (growing)45 34 of 4 2.30Up
Whole fly20 24 of 4

Looking for FBgn0031644. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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