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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031646 through 18771 annotations produced 1 hits



(CG2837):

Annotation Number : CG2837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031646
Gbrowse : chr2L:4904067-4906761 (-) // 100.0 //
Probeset : 1639098_s_at
Accessions : protein= NP_001097086; /// NP_608874; /// NP_723021; /// NP_723022;, nucleotide= NM_001103616; /// NM_135030; /// NM_164601; /// NM_164602;
FlyMine data for FBgn0031646.
BDGP gene expression has embryonic in situ data for CG2837: 15 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0031646 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.40Down
Head22 ± 14 of 4 2.50Up
Eye74 ± 54 of 4 8.41Up
Thoracicoabdominal ganglion2 ± 10 of 4 0.30Down
Salivary gland6 ± 20 of 4 0.74None
Crop8 ± 11 of 4 1.00None
Midgut1 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.50Down
Hindgut4 ± 10 of 4 0.60Down
Heart83 ± 84 of 4 9.50Up
Fat body73 ± 134 of 4 8.29Up
Ovary3 ± 00 of 4 0.40Down
Testis5 ± 11 of 4 0.60Down
Male accessory glands4 ± 10 of 4 0.50None
Virgin spermatheca5 ± 11 of 4 0.62None
Mated spermatheca5 ± 11 of 4 0.61None
Adult carcass29 ± 04 of 4 3.30Up
Larval CNS4 ± 22 of 4 0.50Down
Larval Salivary gland1 ± 00 of 4 0.20Down
Larval midgut5 ± 10 of 4 0.59None
Larval tubule4 ± 11 of 4 0.50None
Larval hindgut6 ± 01 of 4 0.78None
Larval fat body3 ± 10 of 4 0.40Down
Larval trachea97 ± 94 of 411.07Up
Larval carcass49 ± 124 of 4 5.68Up
S2 cells (growing)2 ± 00 of 4 0.34Down
Whole fly8 ± 03 of 4

Looking for FBgn0031646. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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