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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031651 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L24 (mRpL24):

Annotation Number : CG8849
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031651
Gbrowse : chr2L:4944255-4945343 (-) // 100.0 //
Probeset : 1638947_at
Accessions : protein= NP_523476;, nucleotide= NM_078752;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0031651.
BDGP gene expression has embryonic in situ data for mRpL24: 12 pix of staining in 12 body parts.
VDRC has 3 RNAi stocks for FBgn0031651 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain300 44 of 4 1.60Up
Head213 84 of 4 1.10None
Eye279 84 of 4 1.50Up
Thoracicoabdominal ganglion372 154 of 4 2.00Up
Salivary gland280 174 of 4 1.51Up
Crop203 54 of 4 1.10None
Midgut246 74 of 4 1.30Up
Tubule310 64 of 4 1.70Up
Hindgut297 114 of 4 1.60Up
Heart200 24 of 4 1.08None
Fat body214 314 of 4 1.15None
Ovary233 44 of 4 1.30Up
Testis227 74 of 4 1.20Up
Male accessory glands195 64 of 4 1.00None
Virgin spermatheca218 94 of 4 1.18Up
Mated spermatheca209 84 of 4 1.13None
Adult carcass203 44 of 4 1.10None
Larval CNS189 104 of 4 1.02None
Larval Salivary gland163 114 of 4 0.88None
Larval midgut114 74 of 4 0.61Down
Larval tubule149 44 of 4 0.80Down
Larval hindgut189 74 of 4 1.02None
Larval fat body125 34 of 4 0.70Down
Larval trachea147 84 of 4 0.79Down
Larval carcass148 104 of 4 0.80Down
S2 cells (growing)165 54 of 4 0.89None
Whole fly186 74 of 4

Looking for FBgn0031651. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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