Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031655 through 18771 annotations produced 1 hits



dsmarcal1 (Marcal1):

Annotation Number : CG3753
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031655
Gbrowse : chr2L:4955518-4958292 (+) // 100.0 //
Probeset : 1626531_at
Accessions : protein= NP_608883;, nucleotide= NM_135039;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0031655.
Homophila reports that CG3753 is a close match (5e-12) to human gene RAD54B (NP_036547), a gene associated with Colon adenocarcinoma (3);Lymphoma, non-Hodgkin (3).
TRiP has 1 RNAi stocks for FBgn0031655 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031655 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 14 of 4 0.30Down
Head15 23 of 4 0.20Down
Eye12 04 of 4 0.18Down
Thoracicoabdominal ganglion25 24 of 4 0.40Down
Salivary gland26 52 of 4 0.38Down
Crop29 24 of 4 0.40Down
Midgut13 20 of 4 0.20Down
Tubule26 14 of 4 0.40Down
Hindgut21 24 of 4 0.30Down
Heart13 14 of 4 0.19Down
Fat body20 34 of 4 0.30Down
Ovary150 74 of 4 2.20Up
Testis47 14 of 4 0.70Down
Male accessory glands24 23 of 4 0.30Down
Virgin spermatheca19 13 of 4 0.28Down
Mated spermatheca22 14 of 4 0.32Down
Adult carcass28 31 of 4 0.40Down
Larval CNS51 54 of 4 0.74None
Larval Salivary gland9 10 of 4 0.13Down
Larval midgut3 10 of 4 0.06Down
Larval tubule34 24 of 4 0.50Down
Larval hindgut22 24 of 4 0.32Down
Larval fat body22 44 of 4 0.30Down
Larval trachea23 24 of 4 0.34Down
Larval carcass15 13 of 4 0.23Down
S2 cells (growing)45 24 of 4 0.66Down
Whole fly69 64 of 4

Looking for FBgn0031655. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime