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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031657 through 18771 annotations produced 1 hits



(CG3756):

Annotation Number : CG3756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031657
Gbrowse : chr2L:4969003-4970182 (+) // 100.0 //
Probeset : 1633967_at
Accessions : protein= NP_608885;, nucleotide= NM_135041;
Pathway : 0005666 // DNA-directed RNA polymerase III complex // non-traceable author statement /// 0005736 // DNA-directed RNA pol
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inf
FlyMine data for FBgn0031657.
VDRC has 2 RNAi stocks for FBgn0031657 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain100 ± 44 of 4 0.70Down
Head77 ± 64 of 4 0.50Down
Eye89 ± 34 of 4 0.61Down
Thoracicoabdominal ganglion119 ± 44 of 4 0.80Down
Salivary gland69 ± 54 of 4 0.48Down
Crop72 ± 74 of 4 0.50Down
Midgut107 ± 54 of 4 0.70Down
Tubule82 ± 104 of 4 0.60Down
Hindgut67 ± 24 of 4 0.50Down
Heart65 ± 34 of 4 0.45Down
Fat body84 ± 64 of 4 0.58Down
Ovary211 ± 34 of 4 1.50Up
Testis250 ± 94 of 4 1.70Up
Male accessory glands127 ± 114 of 4 0.90None
Virgin spermatheca61 ± 44 of 4 0.42Down
Mated spermatheca101 ± 44 of 4 0.69Down
Adult carcass60 ± 24 of 4 0.40Down
Larval CNS192 ± 134 of 4 1.32Up
Larval Salivary gland132 ± 104 of 4 0.91None
Larval midgut90 ± 104 of 4 0.62Down
Larval tubule41 ± 24 of 4 0.30Down
Larval hindgut90 ± 94 of 4 0.62Down
Larval fat body46 ± 74 of 4 0.30Down
Larval trachea182 ± 204 of 4 1.25Up
Larval carcass113 ± 334 of 4 0.78None
S2 cells (growing)177 ± 24 of 4 1.21Up
Whole fly145 ± 64 of 4

Looking for FBgn0031657. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime