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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031670 through 18771 annotations produced 1 hits



(CG3887):

Annotation Number : CG3887
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031670
Gbrowse : chr2L:5011112-5012133 (+) // 100.0 //
Probeset : 1624032_at
Accessions : protein= NP_608897;, nucleotide= NM_135053;
Interpro : 0008430 // selenium binding // inferred from electronic annotation
FlyMine data for FBgn0031670.
BDGP gene expression has embryonic in situ data for CG3887: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0031670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain515 ± 124 of 4 0.80None
Head660 ± 234 of 4 1.10None
Eye1196 ± 344 of 4 1.93Up
Thoracicoabdominal ganglion610 ± 194 of 4 1.00None
Salivary gland594 ± 374 of 4 0.96None
Crop468 ± 124 of 4 0.80Down
Midgut796 ± 134 of 4 1.30Up
Tubule671 ± 154 of 4 1.10Up
Hindgut593 ± 144 of 4 1.00None
Heart1016 ± 394 of 4 1.64Up
Fat body656 ± 564 of 4 1.06None
Ovary779 ± 134 of 4 1.30Up
Testis718 ± 114 of 4 1.20None
Male accessory glands791 ± 134 of 4 1.30Up
Virgin spermatheca521 ± 64 of 4 0.84None
Mated spermatheca512 ± 104 of 4 0.83None
Adult carcass769 ± 94 of 4 1.20Up
Larval CNS572 ± 74 of 4 0.92None
Larval Salivary gland822 ± 524 of 4 1.32Up
Larval midgut616 ± 294 of 4 0.99None
Larval tubule1349 ± 434 of 4 2.20Up
Larval hindgut659 ± 224 of 4 1.06None
Larval fat body1199 ± 784 of 4 1.90Up
Larval trachea814 ± 444 of 4 1.31Up
Larval carcass677 ± 264 of 4 1.09None
S2 cells (growing)854 ± 74 of 4 1.38Up
Whole fly620 ± 374 of 4

Looking for FBgn0031670. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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