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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031675 through 18771 annotations produced 1 hits


Annotation Number : CG9121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031675
Gbrowse : chr2L:5048363-5050877 (-) // 100.0 //
Probeset : 1636930_at
Accessions : protein= NP_001162884; /// NP_608901;, nucleotide= NM_001169413; /// NM_135057;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity /// 0005515 // prot
FlyMine data for FBgn0031675.
Homophila reports that CG9121 is a close match (7e-11) to human gene NOTCH1;TAN1 (NP_060087), a gene associated with Aortic valve disease, 109730 (3);Leukemia, T-cell acute lymphoblastic (2).
BioGrid reports that CG9121 interacts with CG9277 .
VDRC has 2 RNAi stocks for FBgn0031675 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 44 of 423.50Up
Head21 24 of 4 3.90Up
Eye9 11 of 4 1.76None
Thoracicoabdominal ganglion79 94 of 414.40Up
Salivary gland7 10 of 4 1.35None
Crop4 00 of 4 0.90None
Midgut2 00 of 4 0.50None
Tubule1 00 of 4 0.30Down
Hindgut2 00 of 4 0.40None
Heart5 21 of 4 0.97None
Fat body3 30 of 4 0.67None
Ovary2 00 of 4 0.50None
Testis50 14 of 4 9.20Up
Male accessory glands1 00 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.31None
Mated spermatheca2 10 of 4 0.48None
Adult carcass5 20 of 4 0.90None
Larval CNS52 44 of 4 9.50Up
Larval Salivary gland2 10 of 4 0.52None
Larval midgut3 10 of 4 0.55None
Larval tubule1 00 of 4 0.30None
Larval hindgut0 00 of 4 0.15Down
Larval fat body18 41 of 4 3.30None
Larval trachea0 00 of 4 0.10Down
Larval carcass0 00 of 4 0.11Down
S2 cells (growing)2 00 of 4 0.43None
Whole fly5 11 of 4

Looking for FBgn0031675. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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