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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031676 through 18771 annotations produced 1 hits



(CG14040):

Annotation Number : CG14040
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031676
Gbrowse : chr2L:5052845-5054378 (+) // 100.0 //
Probeset : 1629990_at
Accessions : protein= NP_608902;, nucleotide= NM_135058;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from el
Interpro : 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation /// 0005459 // UDP-galactose transme
FlyMine data for FBgn0031676.
Homophila reports that CG14040 is a close match (9e-17) to human gene CST;SLC35A1 (NP_006407), a gene associated with Congenital disorder of glycosylation, type IIf, 603585 (3).
VDRC has 2 RNAi stocks for FBgn0031676 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 ± 24 of 4 0.60Down
Head77 ± 44 of 4 0.70Down
Eye137 ± 94 of 4 1.19None
Thoracicoabdominal ganglion82 ± 34 of 4 0.70Down
Salivary gland262 ± 144 of 4 2.27Up
Crop95 ± 24 of 4 0.80Down
Midgut162 ± 44 of 4 1.40Up
Tubule95 ± 54 of 4 0.80Down
Hindgut99 ± 34 of 4 0.90Down
Heart99 ± 54 of 4 0.86None
Fat body99 ± 154 of 4 0.86None
Ovary198 ± 24 of 4 1.70Up
Testis163 ± 64 of 4 1.40Up
Male accessory glands700 ± 464 of 4 6.10Up
Virgin spermatheca77 ± 44 of 4 0.67Down
Mated spermatheca73 ± 44 of 4 0.64Down
Adult carcass80 ± 34 of 4 0.70Down
Larval CNS79 ± 44 of 4 0.69Down
Larval Salivary gland154 ± 74 of 4 1.34Up
Larval midgut171 ± 24 of 4 1.49Up
Larval tubule170 ± 54 of 4 1.50Up
Larval hindgut85 ± 44 of 4 0.74Down
Larval fat body136 ± 44 of 4 1.20Up
Larval trachea75 ± 34 of 4 0.66Down
Larval carcass81 ± 64 of 4 0.70Down
S2 cells (growing)440 ± 104 of 4 3.82Up
Whole fly115 ± 54 of 4

Looking for FBgn0031676. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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