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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031682 through 18771 annotations produced 1 hits


Annotation Number : CG5828
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031682
Gbrowse : chr2L:5094020-5095439 (+) // 100.0 //
Probeset : 1627123_at
Accessions : protein= NP_608907;, nucleotide= NM_135063;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031682.
BDGP gene expression has embryonic in situ data for CG5828: 22 pix of staining in 7 body parts.
BioGrid reports that CG5828 interacts with CG8768 .
VDRC has 3 RNAi stocks for FBgn0031682 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 24 of 4 0.60Down
Head74 44 of 4 0.50Down
Eye84 34 of 4 0.60Down
Thoracicoabdominal ganglion65 14 of 4 0.50Down
Salivary gland76 83 of 4 0.54Down
Crop79 44 of 4 0.60Down
Midgut188 154 of 4 1.30Up
Tubule1087 1204 of 4 7.70Up
Hindgut69 34 of 4 0.50Down
Heart74 14 of 4 0.53Down
Fat body58 92 of 4 0.42Down
Ovary249 104 of 4 1.80Up
Testis106 94 of 4 0.80Down
Male accessory glands45 73 of 4 0.30Down
Virgin spermatheca44 24 of 4 0.32Down
Mated spermatheca42 24 of 4 0.30Down
Adult carcass72 33 of 4 0.50Down
Larval CNS86 74 of 4 0.62Down
Larval Salivary gland67 24 of 4 0.48Down
Larval midgut657 1184 of 4 4.67Up
Larval tubule1547 674 of 411.00Up
Larval hindgut78 54 of 4 0.56Down
Larval fat body80 84 of 4 0.60Down
Larval trachea73 64 of 4 0.52Down
Larval carcass112 54 of 4 0.80Down
S2 cells (growing)121 44 of 4 0.86None
Whole fly140 64 of 4

Looking for FBgn0031682. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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