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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031683 through 18771 annotations produced 1 hits


Annotation Number : CG4230
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031683
Gbrowse : chr2L:5096226-5098613 (+) // 100.0 //
Probeset : 1629823_at
Accessions : protein= NP_608908;, nucleotide= NM_135064;
FlyMine data for FBgn0031683.
BDGP gene expression has embryonic in situ data for CG4230: 16 pix of staining in 8 body parts.
VDRC has 2 RNAi stocks for FBgn0031683 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain289 74 of 4 4.10Up
Head86 114 of 4 1.20None
Eye54 14 of 4 0.78Down
Thoracicoabdominal ganglion187 244 of 4 2.70Up
Salivary gland51 34 of 4 0.73Down
Crop42 24 of 4 0.60Down
Midgut66 24 of 4 0.90None
Tubule43 44 of 4 0.60Down
Hindgut47 24 of 4 0.70Down
Heart22 04 of 4 0.33Down
Fat body32 73 of 4 0.47Down
Ovary34 14 of 4 0.50Down
Testis288 194 of 4 4.10Up
Male accessory glands17 23 of 4 0.30Down
Virgin spermatheca18 04 of 4 0.26Down
Mated spermatheca12 01 of 4 0.18Down
Adult carcass56 14 of 4 0.80Down
Larval CNS63 64 of 4 0.90None
Larval Salivary gland26 24 of 4 0.38Down
Larval midgut31 21 of 4 0.45Down
Larval tubule52 14 of 4 0.70Down
Larval hindgut26 14 of 4 0.38Down
Larval fat body53 144 of 4 0.80None
Larval trachea20 24 of 4 0.29Down
Larval carcass24 04 of 4 0.35Down
S2 cells (growing)45 24 of 4 0.65Down
Whole fly70 14 of 4

Looking for FBgn0031683. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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