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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031684 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase 13 kDa A (CG8680):

Annotation Number : CG8680
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031684
Gbrowse : chr2L:5099493-5100178 (-) // 100.0 //
Probeset : 1632455_at
Accessions : protein= NP_608909;, nucleotide= NM_135065;
Pathway : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008137 // NADH dehydrogenase (ubiquinone) activity
FlyMine data for FBgn0031684.
Homophila reports that CG8680 is a close match (1e-25) to human gene NDUFS6 (NP_004544), a gene associated with Complex I, mitochondrial respiratory chain, deficiency of, 252010 (3).
TRiP has 1 RNAi stocks for FBgn0031684 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031684 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain948 ± 194 of 4 0.80Down
Head1080 ± 184 of 4 0.90None
Eye1505 ± 594 of 4 1.32Up
Thoracicoabdominal ganglion1376 ± 254 of 4 1.20Up
Salivary gland1300 ± 424 of 4 1.14Up
Crop1043 ± 664 of 4 0.90None
Midgut1210 ± 254 of 4 1.10None
Tubule1492 ± 374 of 4 1.30Up
Hindgut1428 ± 234 of 4 1.30Up
Heart1462 ± 624 of 4 1.28Up
Fat body1369 ± 974 of 4 1.20Up
Ovary605 ± 154 of 4 0.50Down
Testis1755 ± 424 of 4 1.50Up
Male accessory glands846 ± 304 of 4 0.70Down
Virgin spermatheca1421 ± 804 of 4 1.24Up
Mated spermatheca1389 ± 214 of 4 1.22Up
Adult carcass2075 ± 654 of 4 1.80Up
Larval CNS599 ± 624 of 4 0.52Down
Larval Salivary gland883 ± 654 of 4 0.77Down
Larval midgut798 ± 424 of 4 0.70Down
Larval tubule889 ± 544 of 4 0.80Down
Larval hindgut990 ± 194 of 4 0.87Down
Larval fat body579 ± 284 of 4 0.50Down
Larval trachea613 ± 304 of 4 0.54Down
Larval carcass1065 ± 1044 of 4 0.93None
S2 cells (growing)580 ± 144 of 4 0.51Down
Whole fly1142 ± 464 of 4

Looking for FBgn0031684. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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