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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031693 through 18771 annotations produced 1 hits



Cyp4ac1 (Cyp4ac1):

Annotation Number : CG14032
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031693
Gbrowse : chr2L:5264000-5265899 (+) // 100.0 //
Probeset : 1634640_at
Accessions : protein= NP_608916;, nucleotide= NM_135072;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0031693.
BDGP gene expression has embryonic in situ data for Cyp4ac1: 4 pix of staining in 1 body parts.
Homophila reports that CG14032 is a close match (7e-11) to human gene CYP5;GHOSAL;TBXAS1 (NP_112246), a gene associated with Ghosal syndrome, 231095 (3);Thromboxane synthase deficiency (2).
VDRC has 1 RNAi stocks for FBgn0031693 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 0.20Down
Head318 ± 254 of 4 3.40Up
Eye112 ± 194 of 4 1.19None
Thoracicoabdominal ganglion13 ± 14 of 4 0.10Down
Salivary gland9 ± 40 of 4 0.10Down
Crop12 ± 33 of 4 0.10Down
Midgut393 ± 104 of 4 4.10Up
Tubule6 ± 01 of 4 0.10Down
Hindgut30 ± 14 of 4 0.30Down
Heart336 ± 164 of 4 3.55Up
Fat body535 ± 584 of 4 5.65Up
Ovary1 ± 10 of 4 0.00Down
Testis62 ± 14 of 4 0.70Down
Male accessory glands662 ± 344 of 4 7.00Up
Virgin spermatheca304 ± 324 of 4 3.21Up
Mated spermatheca313 ± 474 of 4 3.31Up
Adult carcass302 ± 134 of 4 3.20Up
Larval CNS3 ± 10 of 4 0.04Down
Larval Salivary gland19 ± 14 of 4 0.20Down
Larval midgut184 ± 64 of 4 1.94Up
Larval tubule13 ± 03 of 4 0.10Down
Larval hindgut29 ± 14 of 4 0.31Down
Larval fat body430 ± 254 of 4 4.50Up
Larval trachea26 ± 74 of 4 0.28Down
Larval carcass17 ± 14 of 4 0.18Down
S2 cells (growing)29 ± 24 of 4 0.31Down
Whole fly94 ± 84 of 4

Looking for FBgn0031693. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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